PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G218900.2
Common NameB456_009G218900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 275aa    MW: 28954.2 Da    PI: 8.6951
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G218900.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.0001109131123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ykC+ C+ksF++   L  H  +H
  Gorai.009G218900.2 109 YKCSVCNKSFNSYQALGGHKASH 131
                         9***********99999998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.96E-9109131No hitNo description
PROSITE profilePS5015710.201109131IPR007087Zinc finger, C2H2
PfamPF139126.1E-14109133IPR007087Zinc finger, C2H2
SMARTSM003550.0034109131IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280111131IPR007087Zinc finger, C2H2
SuperFamilySSF576672.96E-9161188No hitNo description
PfamPF139121.0E-11165190IPR007087Zinc finger, C2H2
PROSITE profilePS501579.099166188IPR007087Zinc finger, C2H2
SMARTSM003550.69166188IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280168188IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MALEALNSPT TTATPPFHFE DTTNLHCLES FTKRKRSKRP RFDHVTTEEE YLALCLIMLA  60
RGGDANSTNT SVIPHRHRSP TPTASPPPAP APAPAPAPAP TSTVQNVSYK CSVCNKSFNS  120
YQALGGHKAS HRKLSGGNDD QSTSTTTSAT AGGVISSALN PSGKTHQCSI CHKNFPTGQA  180
LGGHKRCHYE GGAGNNASAT ASASGVTTSE GVGSTNTMSH ISQRIDFDLN LPALPEFSPA  240
NFFVSGGDDE VESPHPAKKP RLLVRMPPKI ERAQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012445908.10.0PREDICTED: zinc finger protein ZAT10-like
SwissprotQ962895e-65ZAT10_ARATH; Zinc finger protein ZAT10
TrEMBLA0A0D2QKU10.0A0A0D2QKU1_G
STRINGPOPTR_0002s12010.18e-88(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.11e-53salt tolerance zinc finger
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]